Volume 10, 2010

Volume 10, Number 1

Special Issue Dedicated to Michael Waterman on the Occasion of His 67th Birthday: Part III

Guest Editors: Sorin Istrail, Pavel Pevzner, Ron Shamir, and Fengzhu Sun

1. Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications (pp.001--->022)
Qian peng, Max A. Alekseyev, Glenn Tesler, and Pavel A. Pevzner

2. Theory and Algorithms for the Haplotype Assembly Problem (pp.023--->038)
Russell Schwartz

3. Comparison between the SSVS and the LASSO for Genome Wide Association Studies (pp.039--->052)
Sudeep Srivastava and Liang Chen

4. A Motion Planning Approach to Studying Molecular Motions (pp.053--->068)
Lydia Tapia, Shawna Thomas, and Nancy M. Amato

Volume 10, Number 2

Special Issue Dedicated to Michael Waterman on the Occasion of His 67th Birthday: Part IV

Guest Editors: Sorin Istrail, Pavel Pevzner, Ron Shamir, and Fengzhu Sun

1. Methods for Allocating Ambiguous Short-reads (pp.069--->082)
Margaret Taub, Doron Lipson, and Terence P. Speed

2. The Biases of Copy Numbers from Affymetrix SNP Arrays and Their Corrections (pp.083--->098)
Lin Wan, Yi Xiao, Quan Chen, Minghua Deng, and Minping Qian

3. Prediction of Phenotype Information from Genotype Data (pp.099--->114)
Nir Yosef, Jens Gramm, Qian-fei Wang, William S. Noble, Richard M. Karp, and Roded Sharan

4. Spaced Seeds for Cross-species CDNA-to-genome Sequence Alignment (pp.115--->136)
Leming Zhou, Ingrid Mihai, and Liliana Florea

Volume 10, Number 3

1. Periodic and Recursive Control Theoretic Smoothing Splines (pp.137--->154)
Maja Karasalo, Xiaoming Hu, and Clyde F. Martin

2. Variational Bayes and a Problem of Reliable Communication I: Finite Systems (pp.155--->182)
Nigel J. Newton and Sanjoy K. Mitter

3. Equidistant Rank Metric Codes: Construction and Properties (pp.183--->192)
R. S. Selvaraj and Jejaw Demamu

4. Entropy for Pareto-types and its Order Statistics Distributions (pp.193--->202)
Gholam-Hossein Yari and G. R. Mohtashami Borzadaran

Volume 10, Number 4

Special Issue Dedicated to John Baillieul on the Occasion of His 65th Birthday: Part I

Guest Editors: Bozenna Pasik-Duncan, Jie Huang, Hua Wang, Keyong Li and CIS co-editors-in-chief: Wing-Shing Wong and Stephen S.-T. Yau

Dedicated to John Baillieul on the Occasion of His 65th Birthday
Guest Editors and Co-editors-in-chief

John Baillieul and the Development of Modern Control Theory
Roger W. Brockett

1. Optimal Control of Variational Inequalities (pp.203--->220)
Alain Bensoussan, Keerthi Chandrasekaran, and Janos Turi

2. Kinematics of the Rolling Sphere and Quantum Spin (pp.221--->238)
Anthony M. Bloch and Alberto G. Rojo

3. Geometric and Numerical Techniques in Optimal Control of Two and Three-Body Problems (pp.239--->278)
B. Bonnard, J.-B. Caillau, AND G. Picot

4. Optimal Open Loop Markov Decision Rules May Require Parametric Excitation (pp.279--->292)
Roger Brockett

5. Nonholonomic Systems and Sub-Riemannian Geometry (pp.293--->316)
Ovidiu Calin, Der-Chen Chang, and Stephen S. T. Yau